In a word - yes. The obvious difference is the testosterone to estrogen ratio. There will be others. As with men you're just as likely to have hormones affected by stress, lack of sleep, diet and even (yes it's true - although it's very small) the lunar cycle. The big one, as mentioned by Lev, is menstruation.
In other threads, depending on what's being tested, what for and how, even the use of Creatine can affect blood marker (like Creatinine). The same is true of a high protein use. You can either come off Creatine, in this example, for a few days or, as often happens, have another blood test a few days later to get a good set of averages.
In some tests (although not so much hormonal or blood tests) so-called 'white coat syndrome' can affect the results. It's more likely in Blood Pressure and heart rate tests. People get nervous and so the numbers are skewed.
In some famous examples of how test levels are affected hey measured the levels of fans on the winning side and the losing side of a football match. Although minor the levels of losing fans were lower than the winning fans. Equally colors, like red, can affect both mood and test levels. Again not in any major way but still enough to be measured. Again both for men and for women.
I should also mention that being on the contraceptive pill will have a big effect. They will ask. Ditto any other meds you might be on.