Ask 5 people and you'll get 5 different answers. The person I trusted the most on this subject is Lyle McDonald, as he has done extensive research regarding his cardio protocols. He strongly recommends against BCAA's before and during fasted cardio.
The impact on insulin response is small, but may be enough to negatively impact lipolysis. And if you are using yohimbine pre cardio it will most definitely affect the yohimbine according to lyle.
Your best bet is to try it both ways for 1-2 weeks and see if it negatively impacts it for you.
If not doing fasted, then shouldn't be an issue.
You could play it safe, and just drink water during cardio. It's a short portion of your day and you can drink them afterwards just fine.