So, this is how I'm training at the moment. I've marked the exercises that I sometimes switch up. Right now, my ankle feels better than my shoulder, but I still can't put a lot of weight on my leg. When I can't do squats, I like to use the leg press machine instead. Sometimes I do shoulder presses, but I usually go for the smith machine because it feels more comfortable to me. Unfortunately, the bench press still hurts, so I stick to about 70-75% of my one-rep max, but I do more reps. On the bright side, pulling exercises feel pretty smooth and don't cause me any pain.
Oh, and I also booked an appointment with a really good physiotherapist in my town who specializes in athlete injuries (next month). I'm hoping to get some help with my shoulder, and maybe get some other tips. Also to get second opinion about some muscle disbalance issues.