Some may have the propensity to affect the heart in susceptible individuals. I don't know if any research exists pointing any of them to hypertrophy, but as far as other effects go, they are worth looking into. Ephedrine, Norephedrine, possibly Yohimbine, and possibly some Pro-Hormones and Steroids (if they alter LDL/HDL ratios).
I have read protein and homocysteine together in some posts, but don't know if a relation exists. B-6,B-12, and Folate help lower it, in any case.
There may be others as well.